IL_8PV8_040
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- AUUAGG*CAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_040 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.3434
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PV8|1|C1|A|988
8PV8|1|C1|U|989
8PV8|1|C1|U|990
8PV8|1|C1|A|991
8PV8|1|C1|G|992
8PV8|1|C1|G|993
*
8PV8|1|C1|C|1022
8PV8|1|C1|A|1023
8PV8|1|C1|U|1024
8PV8|1|C1|U|1025
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CR
- Protein SDA1
- Chain CS
- Pre-rRNA-processing protein IPI1
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Ch
- Ribosome assembly protein 4
- Chain Cz
- rRNA-processing protein
Coloring options: