IL_8PV8_061
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_061 not in the Motif Atlas
- Geometric match to IL_5J7L_290
- Geometric discrepancy: 0.1213
- The information below is about IL_5J7L_290
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
8PV8|1|C1|G|1475
8PV8|1|C1|G|1476
8PV8|1|C1|U|1477
8PV8|1|C1|U|1478
*
8PV8|1|C1|A|1815
8PV8|1|C1|C|1816
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
Coloring options: