IL_8PV8_087
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CCAG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8PV8|1|C1|C|2160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_087 not in the Motif Atlas
- Homologous match to IL_8C3A_089
- Geometric discrepancy: 0.444
- The information below is about IL_8C3A_089
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8PV8|1|C1|C|2159
8PV8|1|C1|C|2160
8PV8|1|C1|A|2161
8PV8|1|C1|G|2162
*
8PV8|1|C1|C|2208
8PV8|1|C1|G|2209
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CR
- Protein SDA1
- Chain CS
- Pre-rRNA-processing protein IPI1
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LA
- 60S ribosomal protein L2-like protein
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