IL_8PV8_100

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GGUGUAGAAUAG*UAC

Length

15 nucleotides

Bulged bases

8PV8|1|C1|U|2416, 8PV8|1|C1|U|2423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV8|1|C1|G|2414
8PV8|1|C1|G|2415
8PV8|1|C1|U|2416
8PV8|1|C1|G|2417
8PV8|1|C1|U|2418
8PV8|1|C1|A|2419
8PV8|1|C1|G|2420
8PV8|1|C1|A|2421
8PV8|1|C1|A|2422
8PV8|1|C1|U|2423
8PV8|1|C1|A|2424
8PV8|1|C1|G|2425
*
8PV8|1|C1|U|2456
8PV8|1|C1|A|2457
8PV8|1|C1|C|2458

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain CW

Pre-rRNA-processing protein RIX1

Chain Lt

Ribosomal protein