IL_8PV8_108
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_108 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.2819
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8PV8|1|C1|C|2794
8PV8|1|C1|C|2795
8PV8|1|C1|A|2796
8PV8|1|C1|A|2797
8PV8|1|C1|G|2798
*
8PV8|1|C1|C|2808
8PV8|1|C1|G|2809
8PV8|1|C1|A|2810
8PV8|1|C1|C|2811
8PV8|1|C1|G|2812
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain Ch
- Ribosome assembly protein 4
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