IL_8PV8_144
3D structure
- PDB id
- 8PV8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- GGUC*GAC
- Length
- 7 nucleotides
- Bulged bases
- 8PV8|1|C4|U|85
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV8_144 not in the Motif Atlas
- Geometric match to IL_5MSF_001
- Geometric discrepancy: 0.1155
- The information below is about IL_5MSF_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
8PV8|1|C4|G|83
8PV8|1|C4|G|84
8PV8|1|C4|U|85
8PV8|1|C4|C|86
*
8PV8|1|C4|G|93
8PV8|1|C4|A|94
8PV8|1|C4|C|95
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CL
- Putative GTP binding protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LS
- 60S ribosomal protein L20
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