IL_8PVA_020

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_020 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.1074

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8PVA|1|A|U|409
8PVA|1|A|G|410
8PVA|1|A|A|411
8PVA|1|A|A|412
8PVA|1|A|G|413
8PVA|1|A|A|414
8PVA|1|A|A|415
8PVA|1|A|G|416
*
8PVA|1|A|U|427
8PVA|1|A|G|428
8PVA|1|A|U|429
8PVA|1|A|A|430
8PVA|1|A|A|431
8PVA|1|A|A|432
8PVA|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4