IL_8PVA_022

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8PVA|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.081

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8PVA|1|A|G|446
8PVA|1|A|G|447
8PVA|1|A|A|448
8PVA|1|A|G|449
8PVA|1|A|G|450
*
8PVA|1|A|C|483
8PVA|1|A|G|484
8PVA|1|A|U|485
8PVA|1|A|U|486
8PVA|1|A|A|487
8PVA|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16