IL_8PVA_039

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8PVA|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_039 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.058

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8PVA|1|A|G|922
8PVA|1|A|A|923
*
8PVA|1|A|U|1393
8PVA|1|A|A|1394
8PVA|1|A|C|1395

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5