IL_8PVA_049
3D structure
- PDB id
- 8PVA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial ribosome determined by cryoEM at 100 keV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8PVA|1|A|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVA_049 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.074
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PVA|1|A|U|1052
8PVA|1|A|G|1053
8PVA|1|A|C|1054
8PVA|1|A|A|1055
8PVA|1|A|U|1056
*
8PVA|1|A|A|1204
8PVA|1|A|U|1205
8PVA|1|A|G|1206
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
- Chain X
- mRNA
- Chain Y
- Transfer RNA; tRNA
Coloring options: