IL_8PVA_109

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8PVA|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVA|1|a|C|1043
8PVA|1|a|C|1044
8PVA|1|a|C|1045
8PVA|1|a|A|1046
8PVA|1|a|G|1047
8PVA|1|a|A|1048
8PVA|1|a|C|1049
8PVA|1|a|A|1050
8PVA|1|a|G|1051
8PVA|1|a|C|1052
*
8PVA|1|a|G|1107
8PVA|1|a|U|1108
8PVA|1|a|C|1109
8PVA|1|a|G|1110
8PVA|1|a|A|1111
8PVA|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

Large ribosomal subunit protein uL6