IL_8PVA_119

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8PVA|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_119 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1086

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8PVA|1|a|C|1417
8PVA|1|a|G|1418
8PVA|1|a|A|1419
8PVA|1|a|A|1420
8PVA|1|a|G|1421
*
8PVA|1|a|C|1577
8PVA|1|a|U|1578
8PVA|1|a|A|1579
8PVA|1|a|A|1580
8PVA|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains