IL_8PVA_132

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8PVA|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_132 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0476

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8PVA|1|a|C|1686
8PVA|1|a|G|1687
8PVA|1|a|U|1688
8PVA|1|a|A|1689
8PVA|1|a|A|1690
8PVA|1|a|C|1691
*
8PVA|1|a|G|1696
8PVA|1|a|G|1697
8PVA|1|a|A|1698
8PVA|1|a|G|1699
8PVA|1|a|A|1700
8PVA|1|a|A|1701
8PVA|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2