IL_8PVA_145

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8PVA|1|a|C|2055, 8PVA|1|a|U|2613, 8PVA|1|a|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_145 not in the Motif Atlas

Geometric match to IL_5J7L_321

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8PVA|1|a|A|2054
8PVA|1|a|C|2055
8PVA|1|a|G|2056
*
8PVA|1|a|C|2612
8PVA|1|a|U|2613
8PVA|1|a|A|2614
8PVA|1|a|U|2615

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32