IL_8PVA_149

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8PVA|1|a|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_149 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.0829

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8PVA|1|a|U|2081
8PVA|1|a|A|2082
8PVA|1|a|G|2083
*
8PVA|1|a|U|2236
8PVA|1|a|G|2237
8PVA|1|a|G|2238
8PVA|1|a|G|2239

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

50S ribosomal protein L28