IL_8PVA_171

3D structure

PDB id

8PVA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial ribosome determined by cryoEM at 100 keV

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVA_171 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.0768

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

8PVA|1|a|C|2806
8PVA|1|a|U|2807
8PVA|1|a|G|2808
8PVA|1|a|A|2809
8PVA|1|a|A|2810
8PVA|1|a|G|2811
*
8PVA|1|a|C|2889
8PVA|1|a|G|2890
8PVA|1|a|U|2891
8PVA|1|a|G|2892

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

50S ribosomal protein L32