IL_8PVK_016
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GCAC*GG(OMG)UUA(A2M)AUAGCAC
- Length
- 18 nucleotides
- Bulged bases
- 8PVK|1|C1|A|388, 8PVK|1|C1|U|391, 8PVK|1|C1|A|395
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_016 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1318
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8PVK|1|C1|G|369
8PVK|1|C1|C|370
8PVK|1|C1|A|371
8PVK|1|C1|C|372
*
8PVK|1|C1|G|383
8PVK|1|C1|G|384
8PVK|1|C1|OMG|385
8PVK|1|C1|U|386
8PVK|1|C1|U|387
8PVK|1|C1|A|388
8PVK|1|C1|A2M|389
8PVK|1|C1|A|390
8PVK|1|C1|U|391
8PVK|1|C1|A|392
8PVK|1|C1|G|393
8PVK|1|C1|C|394
8PVK|1|C1|A|395
8PVK|1|C1|C|396
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LY
- 60S ribosomal protein L26-like protein
- Chain Ll
- Ribosomal protein eL39
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