IL_8PVK_037

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GACCUUC*GUAUC

Length

12 nucleotides

Bulged bases

8PVK|1|C1|A|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVK|1|C1|G|958
8PVK|1|C1|A|959
8PVK|1|C1|C|960
8PVK|1|C1|C|961
8PVK|1|C1|U|962
8PVK|1|C1|U|963
8PVK|1|C1|C|964
*
8PVK|1|C1|G|1084
8PVK|1|C1|U|1085
8PVK|1|C1|A|1086
8PVK|1|C1|U|1087
8PVK|1|C1|C|1088

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LQ

Ribosomal protein L18-like protein