IL_8PVK_048
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8PVK|1|C1|C|1179, 8PVK|1|C1|A|1187, 8PVK|1|C1|A|1284, 8PVK|1|C1|A|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|G|1177
8PVK|1|C1|A|1178
8PVK|1|C1|C|1179
8PVK|1|C1|A|1180
8PVK|1|C1|C|1181
8PVK|1|C1|C|1182
8PVK|1|C1|A|1183
8PVK|1|C1|C|1184
8PVK|1|C1|A|1185
8PVK|1|C1|A|1186
8PVK|1|C1|A|1187
8PVK|1|C1|A|1188
*
8PVK|1|C1|U|1282
8PVK|1|C1|G|1283
8PVK|1|C1|A|1284
8PVK|1|C1|A|1285
8PVK|1|C1|A|1286
8PVK|1|C1|A|1287
8PVK|1|C1|U|1288
8PVK|1|C1|G|1289
8PVK|1|C1|G|1290
8PVK|1|C1|A|1291
8PVK|1|C1|U|1292
8PVK|1|C1|G|1293
8PVK|1|C1|G|1294
8PVK|1|C1|C|1295
8PVK|1|C1|G|1296
8PVK|1|C1|C|1297
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
Coloring options: