IL_8PVK_076

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_076 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3511

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

8PVK|1|C1|G|1877
8PVK|1|C1|G|1878
8PVK|1|C1|G|1879
8PVK|1|C1|A|1880
8PVK|1|C1|A|1881
*
8PVK|1|C1|U|2299
8PVK|1|C1|OMC|2300
8PVK|1|C1|C|2301

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain Cb

Zinc finger domain-containing protein

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein