IL_8PVK_083

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

AUC*G(A2M)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_083 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1722

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8PVK|1|C1|A|2089
8PVK|1|C1|U|2090
8PVK|1|C1|C|2091
*
8PVK|1|C1|G|2288
8PVK|1|C1|A2M|2289
8PVK|1|C1|U|2290

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2