IL_8PVK_089

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8PVK|1|C1|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_089 not in the Motif Atlas

Homologous match to IL_8P9A_315

Geometric discrepancy: 0.5343

The information below is about IL_8P9A_315

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8PVK|1|C1|G|2169
8PVK|1|C1|A|2170
8PVK|1|C1|A|2171
8PVK|1|C1|U|2172
8PVK|1|C1|G|2173
*
8PVK|1|C1|C|2198
8PVK|1|C1|G|2199
8PVK|1|C1|C|2200

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2