IL_8PVK_100

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUGUAGAAUAGG*CUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PVK|1|C1|G|2414
8PVK|1|C1|G|2415
8PVK|1|C1|U|2416
8PVK|1|C1|G|2417
8PVK|1|C1|U|2418
8PVK|1|C1|A|2419
8PVK|1|C1|G|2420
8PVK|1|C1|A|2421
8PVK|1|C1|A|2422
8PVK|1|C1|U|2423
8PVK|1|C1|A|2424
8PVK|1|C1|G|2425
8PVK|1|C1|G|2426
*
8PVK|1|C1|C|2455
8PVK|1|C1|U|2456
8PVK|1|C1|A|2457
8PVK|1|C1|C|2458

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain Lr

Ribosomal protein