IL_8PVK_127

3D structure

PDB id

8PVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8PVK|1|C1|U|3122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVK_127 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.1825

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PVK|1|C1|G|3121
8PVK|1|C1|U|3122
8PVK|1|C1|U|3123
*
8PVK|1|C1|A|3223
8PVK|1|C1|C|3224

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CO

DUF2423 domain-containing protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lf

60S ribosomal protein l33-like protein