IL_8PVK_154
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- (OMG)AAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8PVK|1|C1|A|915, 8PVK|1|C1|G|919
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVK_154 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.1668
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8PVK|1|C1|OMG|787
8PVK|1|C1|A|788
8PVK|1|C1|A|789
8PVK|1|C1|A|790
8PVK|1|C1|G|791
*
8PVK|1|C1|C|913
8PVK|1|C1|U|914
8PVK|1|C1|A|915
8PVK|1|C1|G|916
8PVK|1|C1|U|917
8PVK|1|C1|A|918
8PVK|1|C1|G|919
8PVK|1|C1|C|920
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
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