IL_8PVL_048
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8PVL|1|C1|C|1179, 8PVL|1|C1|A|1187, 8PVL|1|C1|A|1284, 8PVL|1|C1|A|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVL|1|C1|G|1177
8PVL|1|C1|A|1178
8PVL|1|C1|C|1179
8PVL|1|C1|A|1180
8PVL|1|C1|C|1181
8PVL|1|C1|C|1182
8PVL|1|C1|A|1183
8PVL|1|C1|C|1184
8PVL|1|C1|A|1185
8PVL|1|C1|A|1186
8PVL|1|C1|A|1187
8PVL|1|C1|A|1188
*
8PVL|1|C1|U|1282
8PVL|1|C1|G|1283
8PVL|1|C1|A|1284
8PVL|1|C1|A|1285
8PVL|1|C1|A|1286
8PVL|1|C1|A|1287
8PVL|1|C1|U|1288
8PVL|1|C1|G|1289
8PVL|1|C1|G|1290
8PVL|1|C1|A|1291
8PVL|1|C1|U|1292
8PVL|1|C1|G|1293
8PVL|1|C1|G|1294
8PVL|1|C1|C|1295
8PVL|1|C1|G|1296
8PVL|1|C1|C|1297
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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