IL_8PVL_051
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8PVL|1|C1|G|1219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PVL_051 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.397
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PVL|1|C1|G|1217
8PVL|1|C1|U|1218
8PVL|1|C1|G|1219
8PVL|1|C1|G|1220
8PVL|1|C1|C|1221
*
8PVL|1|C1|G|1233
8PVL|1|C1|A|1234
8PVL|1|C1|A|1235
8PVL|1|C1|U|1236
8PVL|1|C1|C|1237
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL10
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Ch
- Ribosome assembly protein 4
- Chain LK
- 60S ribosomal protein L12-like protein
Coloring options: