IL_8PVL_058

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GGG*C(OMC)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_058 not in the Motif Atlas

Geometric match to IL_3GM7_005

Geometric discrepancy: 0.1716

The information below is about IL_3GM7_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PVL|1|C1|G|1468
8PVL|1|C1|G|1469
8PVL|1|C1|G|1470
*
8PVL|1|C1|C|1835
8PVL|1|C1|OMC|1836
8PVL|1|C1|C|1837

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lg

Ribosomal protein l34-like protein