IL_8PVL_098

3D structure

PDB id

8PVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8PVL|1|C1|G|2565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PVL_098 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1521

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8PVL|1|C1|U|2386
8PVL|1|C1|A|2387
8PVL|1|C1|G|2388
*
8PVL|1|C1|U|2563
8PVL|1|C1|G|2564
8PVL|1|C1|G|2565
8PVL|1|C1|G|2566

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain LA

60S ribosomal protein L2-like protein

Chain LN

Ribosomal protein L15