IL_8Q4F_015

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAC,GUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_015 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.2049

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8Q4F|1|A|U|154
8Q4F|1|A|A|155
8Q4F|1|A|C|156
*
8Q4F|1|A|G|165
8Q4F|1|A|U|166
8Q4F|1|A|A|167

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20