3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GG*UGACC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_018 not in the Motif Atlas
Homologous match to IL_4LFB_013
Geometric discrepancy: 0.1579
The information below is about IL_4LFB_013
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

8Q4F|1|A|G|292
8Q4F|1|A|G|293
*
8Q4F|1|A|U|304
8Q4F|1|A|G|305
8Q4F|1|A|A|306
8Q4F|1|A|C|307
8Q4F|1|A|C|308

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
Small ribosomal subunit protein bS16

Coloring options:


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