IL_8Q4F_024

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

8Q4F|1|A|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_024 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1579

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8Q4F|1|A|G|446
8Q4F|1|A|G|447
8Q4F|1|A|A|448
8Q4F|1|A|G|449
8Q4F|1|A|G|450
*
8Q4F|1|A|C|483
8Q4F|1|A|G|484
8Q4F|1|A|U|485
8Q4F|1|A|U|486
8Q4F|1|A|A|487
8Q4F|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16