IL_8Q4F_033
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CAG,CUG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_033 not in the Motif Atlas
- Geometric match to IL_5TBW_027
- Geometric discrepancy: 0.1835
- The information below is about IL_5TBW_027
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8Q4F|1|A|C|599
8Q4F|1|A|A|600
8Q4F|1|A|G|601
*
8Q4F|1|A|C|637
8Q4F|1|A|U|638
8Q4F|1|A|G|639
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain Q
- Small ribosomal subunit protein uS17
Coloring options: