IL_8Q4F_036

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_036 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.1359

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8Q4F|1|A|G|654
8Q4F|1|A|A|655
*
8Q4F|1|A|U|751
8Q4F|1|A|G|752
8Q4F|1|A|A|753
8Q4F|1|A|C|754

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain O

Small ribosomal subunit protein uS15