IL_8Q4F_057

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

8Q4F|1|A|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_057 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.1798

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8Q4F|1|A|U|1060
8Q4F|1|A|G|1061
*
8Q4F|1|A|C|1195
8Q4F|1|A|A|1196
8Q4F|1|A|A|1197

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14