3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUAG*CGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_072 not in the Motif Atlas
Geometric match to IL_3PDR_004
Geometric discrepancy: 0.3052
The information below is about IL_3PDR_004
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

8Q4F|1|A|G|1439
8Q4F|1|A|U|1440
8Q4F|1|A|A|1441
8Q4F|1|A|G|1442
*
8Q4F|1|A|C|1460
8Q4F|1|A|G|1461
8Q4F|1|A|C|1462

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
Small ribosomal subunit protein bS20
Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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