IL_8Q4F_072
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAG*CGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_072 not in the Motif Atlas
- Geometric match to IL_3PDR_004
- Geometric discrepancy: 0.3052
- The information below is about IL_3PDR_004
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_51387.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 20
Unit IDs
8Q4F|1|A|G|1439
8Q4F|1|A|U|1440
8Q4F|1|A|A|1441
8Q4F|1|A|G|1442
*
8Q4F|1|A|C|1460
8Q4F|1|A|G|1461
8Q4F|1|A|C|1462
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- Small ribosomal subunit protein bS20
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: