3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_075 not in the Motif Atlas
Homologous match to IL_4WF9_001
Geometric discrepancy: 0.1229
The information below is about IL_4WF9_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_04021.2
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8Q4F|1|a|G|24
8Q4F|1|a|U|25
8Q4F|1|a|G|26
8Q4F|1|a|G|27
8Q4F|1|a|A|28
8Q4F|1|a|U|29
8Q4F|1|a|G|30
*
8Q4F|1|a|C|510
8Q4F|1|a|U|511
8Q4F|1|a|G|512
8Q4F|1|a|A|513
8Q4F|1|a|A|514
8Q4F|1|a|A|515
8Q4F|1|a|C|516

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
Large ribosomal subunit protein bL20
Chain z
Large ribosomal subunit protein bL32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3012 s
Application loaded.