3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAG*CGAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_082 not in the Motif Atlas
Homologous match to IL_5J7L_252
Geometric discrepancy: 0.1572
The information below is about IL_5J7L_252
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47972.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

8Q4F|1|a|C|269
8Q4F|1|a|A|270
8Q4F|1|a|G|271
*
8Q4F|1|a|C|366
8Q4F|1|a|G|367
8Q4F|1|a|A|368
8Q4F|1|a|U|369
8Q4F|1|a|G|370

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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