3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UU*GGA
Length
5 nucleotides
Bulged bases
8Q4F|1|a|G|729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_097 not in the Motif Atlas
Geometric match to IL_7RQB_020
Geometric discrepancy: 0.1136
The information below is about IL_7RQB_020
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
42

Unit IDs

8Q4F|1|a|U|702
8Q4F|1|a|U|703
*
8Q4F|1|a|G|728
8Q4F|1|a|G|729
8Q4F|1|a|A|730

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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