3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_128 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.1145
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8Q4F|1|a|C|1357
8Q4F|1|a|G|1358
8Q4F|1|a|A|1359
8Q4F|1|a|G|1360
8Q4F|1|a|G|1361
*
8Q4F|1|a|C|1370
8Q4F|1|a|G|1371
8Q4F|1|a|U|1372
8Q4F|1|a|A|1373
8Q4F|1|a|G|1374

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain c
Large ribosomal subunit protein uL2

Coloring options:


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