IL_8Q4F_145

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8Q4F|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_145 not in the Motif Atlas

Homologous match to IL_8VTW_067

Geometric discrepancy: 0.1461

The information below is about IL_8VTW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Q4F|1|a|C|1686
8Q4F|1|a|G|1687
8Q4F|1|a|U|1688
8Q4F|1|a|A|1689
8Q4F|1|a|A|1690
8Q4F|1|a|C|1691
*
8Q4F|1|a|G|1696
8Q4F|1|a|G|1697
8Q4F|1|a|A|1698
8Q4F|1|a|G|1699
8Q4F|1|a|A|1700
8Q4F|1|a|A|1701
8Q4F|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2