IL_8Q4F_148

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

8Q4F|1|a|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_148 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.152

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8Q4F|1|a|G|1770
8Q4F|1|a|C|1771
*
8Q4F|1|a|G|1980
8Q4F|1|a|A|1981
8Q4F|1|a|U|1982

Current chains

Chain a

23S rRNA

Nearby chains