IL_8Q4F_154

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_154 not in the Motif Atlas

Homologous match to IL_8VTW_075

Geometric discrepancy: 0.1309

The information below is about IL_8VTW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8Q4F|1|a|G|1933
8Q4F|1|a|C|1934
*
8Q4F|1|a|G|1964
8Q4F|1|a|C|1965
8Q4F|1|a|A|1966
8Q4F|1|a|C|1967

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA