IL_8Q4F_158

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_158 not in the Motif Atlas

Homologous match to IL_5J7L_322

Geometric discrepancy: 0.1632

The information below is about IL_5J7L_322

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|C|2064
8Q4F|1|a|C|2065
8Q4F|1|a|C|2066
*
8Q4F|1|a|G|2444
8Q4F|1|a|G|2446

Current chains

Chain a

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15