3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
8Q4F|1|a|G|2238
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_161 not in the Motif Atlas
Homologous match to IL_8VTW_081
Geometric discrepancy: 0.161
The information below is about IL_8VTW_081
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38958.10
Basepair signature
cWW-cWW-cWW-tHS
Number of instances in this motif group
9

Unit IDs

8Q4F|1|a|U|2081
8Q4F|1|a|A|2082
8Q4F|1|a|G|2083
*
8Q4F|1|a|U|2236
8Q4F|1|a|G|2237
8Q4F|1|a|G|2238
8Q4F|1|a|G|2239

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2
Chain w
Large ribosomal subunit protein bL28

Coloring options:


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