IL_8Q4F_169

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8Q4F|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_169 not in the Motif Atlas

Homologous match to IL_8VTW_093

Geometric discrepancy: 0.1693

The information below is about IL_8VTW_093

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8Q4F|1|a|A|2459
8Q4F|1|a|U|2460
8Q4F|1|a|A|2461
*
8Q4F|1|a|U|2489
8Q4F|1|a|G|2490
8Q4F|1|a|U|2491
8Q4F|1|a|U|2492
8Q4F|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16