IL_8Q4F_172

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8Q4F|1|a|G|2576, 8Q4F|1|a|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_172 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.167

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8Q4F|1|a|C|2510
8Q4F|1|a|U|2511
8Q4F|1|a|C|2512
*
8Q4F|1|a|G|2574
8Q4F|1|a|C|2575
8Q4F|1|a|G|2576
8Q4F|1|a|A|2577
8Q4F|1|a|G|2578

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain z

Large ribosomal subunit protein bL32