3D structure

PDB id
8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Q4F_178 not in the Motif Atlas
Homologous match to IL_8VTW_102
Geometric discrepancy: 0.1272
The information below is about IL_8VTW_102
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.3
Basepair signature
cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R
Number of instances in this motif group
5

Unit IDs

8Q4F|1|a|C|2652
8Q4F|1|a|U|2653
8Q4F|1|a|A|2654
8Q4F|1|a|G|2655
8Q4F|1|a|U|2656
8Q4F|1|a|A|2657
8Q4F|1|a|C|2658
*
8Q4F|1|a|G|2663
8Q4F|1|a|G|2664
8Q4F|1|a|A|2665
8Q4F|1|a|C|2666
8Q4F|1|a|C|2667
8Q4F|1|a|G|2668

Current chains

Chain a
23S rRNA

Nearby chains

Chain g
Large ribosomal subunit protein uL6
Chain j
Large ribosomal subunit protein uL14

Coloring options:


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