IL_8Q4F_178
3D structure
- PDB id
- 8Q4F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of arbekacin bound Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q4F_178 not in the Motif Atlas
- Homologous match to IL_8VTW_102
- Geometric discrepancy: 0.1272
- The information below is about IL_8VTW_102
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.3
- Basepair signature
- cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R
- Number of instances in this motif group
- 5
Unit IDs
8Q4F|1|a|C|2652
8Q4F|1|a|U|2653
8Q4F|1|a|A|2654
8Q4F|1|a|G|2655
8Q4F|1|a|U|2656
8Q4F|1|a|A|2657
8Q4F|1|a|C|2658
*
8Q4F|1|a|G|2663
8Q4F|1|a|G|2664
8Q4F|1|a|A|2665
8Q4F|1|a|C|2666
8Q4F|1|a|C|2667
8Q4F|1|a|G|2668
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL6
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: