IL_8Q4F_206

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAUACAAAGAGAAG*CGGACCUCAUAAAGUGCG

Length

34 nucleotides

Bulged bases

8Q4F|1|A|C|1249, 8Q4F|1|A|A|1257, 8Q4F|1|A|G|1278, 8Q4F|1|A|A|1280, 8Q4F|1|A|C|1281, 8Q4F|1|A|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|A|C|1243
8Q4F|1|A|G|1244
8Q4F|1|A|C|1245
8Q4F|1|A|A|1246
8Q4F|1|A|U|1247
8Q4F|1|A|A|1248
8Q4F|1|A|C|1249
8Q4F|1|A|A|1250
8Q4F|1|A|A|1251
8Q4F|1|A|A|1252
8Q4F|1|A|G|1253
8Q4F|1|A|A|1254
8Q4F|1|A|G|1255
8Q4F|1|A|A|1256
8Q4F|1|A|A|1257
8Q4F|1|A|G|1258
*
8Q4F|1|A|C|1277
8Q4F|1|A|G|1278
8Q4F|1|A|G|1279
8Q4F|1|A|A|1280
8Q4F|1|A|C|1281
8Q4F|1|A|C|1282
8Q4F|1|A|U|1283
8Q4F|1|A|C|1284
8Q4F|1|A|A|1285
8Q4F|1|A|U|1286
8Q4F|1|A|A|1287
8Q4F|1|A|A|1288
8Q4F|1|A|A|1289
8Q4F|1|A|G|1290
8Q4F|1|A|U|1291
8Q4F|1|A|G|1292
8Q4F|1|A|C|1293
8Q4F|1|A|G|1294

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14