IL_8Q4F_210

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGGGUAG*CGAAUACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|G|855
8Q4F|1|a|G|856
8Q4F|1|a|G|857
8Q4F|1|a|G|858
8Q4F|1|a|G|859
8Q4F|1|a|U|860
8Q4F|1|a|A|861
8Q4F|1|a|G|862
*
8Q4F|1|a|C|915
8Q4F|1|a|G|916
8Q4F|1|a|A|917
8Q4F|1|a|A|918
8Q4F|1|a|U|919
8Q4F|1|a|A|920
8Q4F|1|a|C|921
8Q4F|1|a|C|922

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16

Chain v

Large ribosomal subunit protein bL27

Chain y

Large ribosomal subunit protein uL30